Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_1WE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_1WE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_1WE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1WE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75118632 total, 55635 skipped (flags/unmapped)
Fragments: 37750368 total (37266390 tlen-paired, 2368 hash-paired, 446 singletons, 17453 discordant, 463711 orphans, 13209 too large [>5000 bp], 13116876 duplicates)
Reads: 80116160 total, 48349 skipped (flags/unmapped)
Fragments: 40259860 total (39771027 tlen-paired, 2788 hash-paired, 534 singletons, 12210 discordant, 473301 orphans, 10963 too large [>5000 bp], 13728331 duplicates)
Reads: 87379977 total, 52773 skipped (flags/unmapped)
Fragments: 43915259 total (43334687 tlen-paired, 4806 hash-paired, 463 singletons, 18076 discordant, 557227 orphans, 27188 too large [>5000 bp], 15341330 duplicates)
Reads: 88359511 total, 87187 skipped (flags/unmapped)
Fragments: 44618044 total (43117630 tlen-paired, 3838 hash-paired, 491 singletons, 289690 discordant, 1206395 orphans, 121561 too large [>5000 bp], 15534170 duplicates)