Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_01P-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_01P-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_01P-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_01P-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69652431 total, 56228 skipped (flags/unmapped)
Fragments: 35037741 total (34517663 tlen-paired, 3366 hash-paired, 418 singletons, 15211 discordant, 501083 orphans, 11111 too large [>5000 bp], 12529859 duplicates)
Reads: 73886555 total, 49556 skipped (flags/unmapped)
Fragments: 37167375 total (36634880 tlen-paired, 2676 hash-paired, 481 singletons, 10468 discordant, 518870 orphans, 10800 too large [>5000 bp], 12972073 duplicates)
Reads: 80689811 total, 52795 skipped (flags/unmapped)
Fragments: 40597450 total (39991833 tlen-paired, 3027 hash-paired, 419 singletons, 15340 discordant, 586831 orphans, 14683 too large [>5000 bp], 14516530 duplicates)
Reads: 82270654 total, 87212 skipped (flags/unmapped)
Fragments: 41637435 total (39930402 tlen-paired, 2320 hash-paired, 464 singletons, 335381 discordant, 1368868 orphans, 138952 too large [>5000 bp], 14795391 duplicates)