Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2FO-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2FO-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2FO-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2FO-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 108363408 total, 83157 skipped (flags/unmapped)
Fragments: 54508568 total (53714900 tlen-paired, 4468 hash-paired, 558 singletons, 18603 discordant, 770039 orphans, 16856 too large [>5000 bp], 22356679 duplicates)
Reads: 114943975 total, 74146 skipped (flags/unmapped)
Fragments: 57825072 total (56994647 tlen-paired, 4263 hash-paired, 742 singletons, 13097 discordant, 812323 orphans, 16375 too large [>5000 bp], 23239218 duplicates)
Reads: 126195418 total, 79274 skipped (flags/unmapped)
Fragments: 63487526 total (62546248 tlen-paired, 4390 hash-paired, 563 singletons, 18900 discordant, 917425 orphans, 29540 too large [>5000 bp], 26142654 duplicates)
Reads: 128719439 total, 129191 skipped (flags/unmapped)
Fragments: 65170619 total (62428435 tlen-paired, 5163 hash-paired, 648 singletons, 541041 discordant, 2195332 orphans, 222495 too large [>5000 bp], 26591107 duplicates)