Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6EX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6EX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6EX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6EX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Reads: 70880336 total, 53685 skipped (flags/unmapped)
Fragments: 35518636 total (35271154 tlen-paired, 3023 hash-paired, 331 singletons, 12882 discordant, 231246 orphans, 10478 too large [>5000 bp], 11870864 duplicates)
Reads: 76720221 total, 44217 skipped (flags/unmapped)
Fragments: 38448134 total (38196456 tlen-paired, 2268 hash-paired, 407 singletons, 9598 discordant, 239405 orphans, 9774 too large [>5000 bp], 12572859 duplicates)
Reads: 75837397 total, 48216 skipped (flags/unmapped)
Fragments: 38011531 total (37728514 tlen-paired, 3856 hash-paired, 321 singletons, 11010 discordant, 267830 orphans, 17135 too large [>5000 bp], 12752669 duplicates)
Reads: 84029171 total, 81203 skipped (flags/unmapped)
Fragments: 42184270 total (41528644 tlen-paired, 2375 hash-paired, 302 singletons, 127213 discordant, 525736 orphans, 52733 too large [>5000 bp], 14180994 duplicates)