Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7W9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1136_7W9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_7W9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7W9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62596116 total, 47595 skipped (flags/unmapped)
Fragments: 31377392 total (31139340 tlen-paired, 2409 hash-paired, 318 singletons, 11806 discordant, 223519 orphans, 8787 too large [>5000 bp], 10175650 duplicates)
Reads: 74193020 total, 73347 skipped (flags/unmapped)
Fragments: 37274084 total (36621046 tlen-paired, 1071 hash-paired, 313 singletons, 124198 discordant, 527456 orphans, 49637 too large [>5000 bp], 12165395 duplicates)
Reads: 67614521 total, 38326 skipped (flags/unmapped)
Fragments: 33896178 total (33655320 tlen-paired, 2065 hash-paired, 365 singletons, 8242 discordant, 230186 orphans, 7195 too large [>5000 bp], 10773658 duplicates)
Reads: 73909228 total, 43272 skipped (flags/unmapped)
Fragments: 37055082 total (36759129 tlen-paired, 3341 hash-paired, 274 singletons, 12520 discordant, 279818 orphans, 17942 too large [>5000 bp], 12094908 duplicates)