Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2XT-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2XT-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2XT-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2XT-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77550115 total, 45914 skipped (flags/unmapped)
Fragments: 38861313 total (38610373 tlen-paired, 2992 hash-paired, 360 singletons, 10933 discordant, 236655 orphans, 9295 too large [>5000 bp], 13348942 duplicates)
Reads: 72460687 total, 55563 skipped (flags/unmapped)
Fragments: 36311625 total (36054406 tlen-paired, 3323 hash-paired, 336 singletons, 16392 discordant, 237168 orphans, 9689 too large [>5000 bp], 12660454 duplicates)
Reads: 85112852 total, 53739 skipped (flags/unmapped)
Fragments: 42650502 total (42342749 tlen-paired, 6450 hash-paired, 314 singletons, 16534 discordant, 284455 orphans, 21439 too large [>5000 bp], 14992337 duplicates)
Reads: 85334497 total, 85503 skipped (flags/unmapped)
Fragments: 42827309 total (42210493 tlen-paired, 3096 hash-paired, 329 singletons, 113376 discordant, 500015 orphans, 47360 too large [>5000 bp], 15097586 duplicates)