Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BQFX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQFX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQFX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BQFX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80236261 total, 75924 skipped (flags/unmapped)
Fragments: 40331148 total (39791590 tlen-paired, 5143 hash-paired, 422 singletons, 11146 discordant, 522847 orphans, 10655 too large [>5000 bp], 16745991 duplicates)
Reads: 88881603 total, 70819 skipped (flags/unmapped)
Fragments: 44710145 total (44060794 tlen-paired, 3284 hash-paired, 610 singletons, 9045 discordant, 636412 orphans, 13758 too large [>5000 bp], 18080183 duplicates)
Reads: 87672051 total, 68974 skipped (flags/unmapped)
Fragments: 44084106 total (43476816 tlen-paired, 3489 hash-paired, 324 singletons, 9594 discordant, 593883 orphans, 14536 too large [>5000 bp], 18220543 duplicates)
Reads: 97061573 total, 126365 skipped (flags/unmapped)
Fragments: 49108942 total (47119090 tlen-paired, 4086 hash-paired, 427 singletons, 406880 discordant, 1578459 orphans, 148105 too large [>5000 bp], 20046612 duplicates)