Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2CW-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_2CW-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_2CW-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2CW-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81785433 total, 43281 skipped (flags/unmapped)
Fragments: 40977499 total (40734993 tlen-paired, 2524 hash-paired, 437 singletons, 8906 discordant, 230639 orphans, 9115 too large [>5000 bp], 13460731 duplicates)
Reads: 90126680 total, 73626 skipped (flags/unmapped)
Fragments: 45235804 total (44594964 tlen-paired, 2025 hash-paired, 329 singletons, 121275 discordant, 517211 orphans, 49493 too large [>5000 bp], 15251224 duplicates)
Reads: 75875239 total, 54502 skipped (flags/unmapped)
Fragments: 38013070 total (37769193 tlen-paired, 3316 hash-paired, 356 singletons, 13306 discordant, 226899 orphans, 10926 too large [>5000 bp], 12695157 duplicates)
Reads: 89113247 total, 49822 skipped (flags/unmapped)
Fragments: 44653654 total (44352061 tlen-paired, 3427 hash-paired, 281 singletons, 13825 discordant, 284060 orphans, 20229 too large [>5000 bp], 15027038 duplicates)