Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4DX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4DX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4DX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4DX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73474644 total, 60227 skipped (flags/unmapped)
Fragments: 36875374 total (36502205 tlen-paired, 2498 hash-paired, 348 singletons, 13358 discordant, 356965 orphans, 10491 too large [>5000 bp], 13869605 duplicates)
Reads: 78304738 total, 51393 skipped (flags/unmapped)
Fragments: 39306248 total (38916470 tlen-paired, 2455 hash-paired, 460 singletons, 8816 discordant, 378047 orphans, 9678 too large [>5000 bp], 14530976 duplicates)
Reads: 86621530 total, 56191 skipped (flags/unmapped)
Fragments: 43485819 total (43016450 tlen-paired, 3827 hash-paired, 344 singletons, 14827 discordant, 450371 orphans, 22208 too large [>5000 bp], 16467617 duplicates)
Reads: 87850984 total, 96411 skipped (flags/unmapped)
Fragments: 44257197 total (43070094 tlen-paired, 2934 hash-paired, 411 singletons, 233848 discordant, 949910 orphans, 95250 too large [>5000 bp], 16665455 duplicates)