Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7W6-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_7W6-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_7W6-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_7W6-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 99231722 total, 71828 skipped (flags/unmapped)
Fragments: 49754759 total (49351291 tlen-paired, 4123 hash-paired, 393 singletons, 23061 discordant, 375891 orphans, 13330 too large [>5000 bp], 17664121 duplicates)
Reads: 108086882 total, 59170 skipped (flags/unmapped)
Fragments: 54192678 total (53787749 tlen-paired, 3763 hash-paired, 473 singletons, 16252 discordant, 384441 orphans, 13635 too large [>5000 bp], 18963028 duplicates)
Reads: 106540410 total, 62668 skipped (flags/unmapped)
Fragments: 53429504 total (52983229 tlen-paired, 3925 hash-paired, 389 singletons, 20288 discordant, 421673 orphans, 20398 too large [>5000 bp], 19207131 duplicates)
Reads: 117474329 total, 102527 skipped (flags/unmapped)
Fragments: 59021154 total (57990221 tlen-paired, 2900 hash-paired, 390 singletons, 197405 discordant, 830238 orphans, 80061 too large [>5000 bp], 21225302 duplicates)