Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_BW-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_BW-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_BW-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_BW-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68279522 total, 40071 skipped (flags/unmapped)
Fragments: 34241202 total (33972460 tlen-paired, 2542 hash-paired, 374 singletons, 6731 discordant, 259095 orphans, 8258 too large [>5000 bp], 11024711 duplicates)
Reads: 63074599 total, 45197 skipped (flags/unmapped)
Fragments: 31630922 total (31372322 tlen-paired, 3131 hash-paired, 305 singletons, 9597 discordant, 245567 orphans, 6715 too large [>5000 bp], 10425237 duplicates)
Reads: 74902258 total, 71850 skipped (flags/unmapped)
Fragments: 37665276 total (36879259 tlen-paired, 2000 hash-paired, 302 singletons, 156575 discordant, 627140 orphans, 63649 too large [>5000 bp], 12491364 duplicates)
Reads: 67760905 total, 41094 skipped (flags/unmapped)
Fragments: 33987394 total (33692031 tlen-paired, 3434 hash-paired, 223 singletons, 8502 discordant, 283204 orphans, 14225 too large [>5000 bp], 11271654 duplicates)