Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6S7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6S7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6S7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6S7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71152458 total, 62190 skipped (flags/unmapped)
Fragments: 35662024 total (35391732 tlen-paired, 3248 hash-paired, 275 singletons, 15866 discordant, 250903 orphans, 8699 too large [>5000 bp], 11577502 duplicates)
Reads: 76477049 total, 50730 skipped (flags/unmapped)
Fragments: 38332202 total (38059752 tlen-paired, 2761 hash-paired, 354 singletons, 11374 discordant, 257961 orphans, 10115 too large [>5000 bp], 12280439 duplicates)
Reads: 83618816 total, 59532 skipped (flags/unmapped)
Fragments: 41912650 total (41575443 tlen-paired, 6291 hash-paired, 262 singletons, 17126 discordant, 313528 orphans, 23887 too large [>5000 bp], 13739096 duplicates)
Reads: 83788491 total, 87217 skipped (flags/unmapped)
Fragments: 42075819 total (41396518 tlen-paired, 1935 hash-paired, 272 singletons, 126022 discordant, 551072 orphans, 50490 too large [>5000 bp], 13814261 duplicates)