Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7LJ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7LJ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7LJ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7LJ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96139123 total, 71011 skipped (flags/unmapped)
Fragments: 48199284 total (47822200 tlen-paired, 4291 hash-paired, 391 singletons, 18821 discordant, 353581 orphans, 11758 too large [>5000 bp], 18117794 duplicates)
Reads: 103055782 total, 57919 skipped (flags/unmapped)
Fragments: 51668943 total (51290478 tlen-paired, 2998 hash-paired, 513 singletons, 12562 discordant, 362392 orphans, 11441 too large [>5000 bp], 19072500 duplicates)
Reads: 113205539 total, 66589 skipped (flags/unmapped)
Fragments: 56766083 total (56299425 tlen-paired, 5739 hash-paired, 471 singletons, 19333 discordant, 441115 orphans, 24185 too large [>5000 bp], 21486124 duplicates)
Reads: 114409896 total, 108362 skipped (flags/unmapped)
Fragments: 57490597 total (56437694 tlen-paired, 4131 hash-paired, 432 singletons, 201678 discordant, 846662 orphans, 83717 too large [>5000 bp], 21794792 duplicates)