Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_K91-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_K91-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_K91-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_K91-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81879707 total, 43520 skipped (flags/unmapped)
Fragments: 41044846 total (40764048 tlen-paired, 2715 hash-paired, 355 singletons, 7862 discordant, 269866 orphans, 8358 too large [>5000 bp], 13893493 duplicates)
Reads: 76157050 total, 50742 skipped (flags/unmapped)
Fragments: 38173886 total (37904115 tlen-paired, 2144 hash-paired, 390 singletons, 11057 discordant, 256180 orphans, 7553 too large [>5000 bp], 13243654 duplicates)
Reads: 90119496 total, 77128 skipped (flags/unmapped)
Fragments: 45284012 total (44469452 tlen-paired, 3200 hash-paired, 325 singletons, 157552 discordant, 653483 orphans, 64076 too large [>5000 bp], 15758371 duplicates)
Reads: 89669393 total, 49230 skipped (flags/unmapped)
Fragments: 44951184 total (44621491 tlen-paired, 3675 hash-paired, 388 singletons, 11495 discordant, 314135 orphans, 16159 too large [>5000 bp], 15639225 duplicates)