Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3GO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3GO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3GO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3GO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81511001 total, 48672 skipped (flags/unmapped)
Fragments: 40838961 total (40579900 tlen-paired, 3063 hash-paired, 303 singletons, 11585 discordant, 244110 orphans, 14410 too large [>5000 bp], 12696639 duplicates)
Reads: 75540046 total, 55307 skipped (flags/unmapped)
Fragments: 37842319 total (37601877 tlen-paired, 3078 hash-paired, 323 singletons, 13959 discordant, 223082 orphans, 11753 too large [>5000 bp], 11669600 duplicates)
Reads: 82313463 total, 48312 skipped (flags/unmapped)
Fragments: 41238063 total (40994291 tlen-paired, 3400 hash-paired, 378 singletons, 9993 discordant, 230001 orphans, 9702 too large [>5000 bp], 12502812 duplicates)
Reads: 89077835 total, 85544 skipped (flags/unmapped)
Fragments: 44690874 total (44086574 tlen-paired, 3590 hash-paired, 390 singletons, 115095 discordant, 485225 orphans, 48079 too large [>5000 bp], 13913905 duplicates)