Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6H2-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6H2-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6H2-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6H2-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80166479 total, 59375 skipped (flags/unmapped)
Fragments: 40232597 total (39833416 tlen-paired, 3344 hash-paired, 342 singletons, 16037 discordant, 379458 orphans, 10855 too large [>5000 bp], 14767501 duplicates)
Reads: 86641064 total, 53464 skipped (flags/unmapped)
Fragments: 43486072 total (43045547 tlen-paired, 3743 hash-paired, 330 singletons, 13654 discordant, 422798 orphans, 19292 too large [>5000 bp], 16065238 duplicates)
Reads: 87054391 total, 50008 skipped (flags/unmapped)
Fragments: 43691595 total (43275142 tlen-paired, 3268 hash-paired, 519 singletons, 11244 discordant, 401422 orphans, 11567 too large [>5000 bp], 15675750 duplicates)
Reads: 95270595 total, 91315 skipped (flags/unmapped)
Fragments: 47972661 total (46769387 tlen-paired, 3276 hash-paired, 389 singletons, 238442 discordant, 961167 orphans, 97757 too large [>5000 bp], 17693826 duplicates)