Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_QZF-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_QZF-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_QZF-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_QZF-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74630419 total, 58652 skipped (flags/unmapped)
Fragments: 37446853 total (37083391 tlen-paired, 3788 hash-paired, 327 singletons, 12907 discordant, 346440 orphans, 12414 too large [>5000 bp], 13405476 duplicates)
Reads: 79864115 total, 50295 skipped (flags/unmapped)
Fragments: 40079195 total (39700571 tlen-paired, 3972 hash-paired, 427 singletons, 9026 discordant, 365199 orphans, 10528 too large [>5000 bp], 14014182 duplicates)
Reads: 79919248 total, 53630 skipped (flags/unmapped)
Fragments: 40107354 total (39699185 tlen-paired, 3786 hash-paired, 287 singletons, 10691 discordant, 393405 orphans, 22301 too large [>5000 bp], 14432718 duplicates)
Reads: 88282824 total, 85159 skipped (flags/unmapped)
Fragments: 44454394 total (43325531 tlen-paired, 3550 hash-paired, 345 singletons, 226324 discordant, 898644 orphans, 93933 too large [>5000 bp], 15939466 duplicates)