Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_KO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_KO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_KO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_KO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 92254624 total, 55363 skipped (flags/unmapped)
Fragments: 46271021 total (45872368 tlen-paired, 5873 hash-paired, 359 singletons, 15769 discordant, 376652 orphans, 17115 too large [>5000 bp], 17877051 duplicates)
Reads: 78641784 total, 59504 skipped (flags/unmapped)
Fragments: 39435792 total (39103955 tlen-paired, 3401 hash-paired, 439 singletons, 15208 discordant, 312789 orphans, 11962 too large [>5000 bp], 15132253 duplicates)
Reads: 83827849 total, 49804 skipped (flags/unmapped)
Fragments: 42041372 total (41701514 tlen-paired, 2637 hash-paired, 439 singletons, 10792 discordant, 325990 orphans, 10865 too large [>5000 bp], 15833506 duplicates)
Reads: 93030350 total, 85831 skipped (flags/unmapped)
Fragments: 46780539 total (45829708 tlen-paired, 2236 hash-paired, 408 singletons, 182502 discordant, 765685 orphans, 74767 too large [>5000 bp], 18051799 duplicates)