Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3RX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3RX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3RX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3RX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 24667086 total, 15697 skipped (flags/unmapped)
Fragments: 12375591 total (12265013 tlen-paired, 827 hash-paired, 164 singletons, 3342 discordant, 106245 orphans, 3308 too large [>5000 bp], 4434223 duplicates)
Reads: 23180322 total, 18023 skipped (flags/unmapped)
Fragments: 11629439 total (11520838 tlen-paired, 719 hash-paired, 89 singletons, 5109 discordant, 102684 orphans, 3097 too large [>5000 bp], 4278122 duplicates)
Reads: 27256382 total, 17550 skipped (flags/unmapped)
Fragments: 13675514 total (13543914 tlen-paired, 805 hash-paired, 79 singletons, 4933 discordant, 125783 orphans, 6833 too large [>5000 bp], 5008498 duplicates)
Reads: 27442364 total, 29223 skipped (flags/unmapped)
Fragments: 13808631 total (13494122 tlen-paired, 756 hash-paired, 98 singletons, 60654 discordant, 253001 orphans, 24489 too large [>5000 bp], 5051973 duplicates)