Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_MEB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_MEB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_MEB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_MEB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82290296 total, 61027 skipped (flags/unmapped)
Fragments: 41234905 total (40955643 tlen-paired, 4118 hash-paired, 375 singletons, 15955 discordant, 258814 orphans, 9324 too large [>5000 bp], 13379431 duplicates)
Reads: 89846043 total, 52139 skipped (flags/unmapped)
Fragments: 45020131 total (44738855 tlen-paired, 2549 hash-paired, 381 singletons, 11529 discordant, 266817 orphans, 10420 too large [>5000 bp], 14442534 duplicates)
Reads: 88884137 total, 53204 skipped (flags/unmapped)
Fragments: 44540298 total (44247186 tlen-paired, 6310 hash-paired, 346 singletons, 13295 discordant, 273161 orphans, 11922 too large [>5000 bp], 14635080 duplicates)
Reads: 97387119 total, 87244 skipped (flags/unmapped)
Fragments: 48880355 total (48170341 tlen-paired, 3060 hash-paired, 357 singletons, 135629 discordant, 570968 orphans, 55245 too large [>5000 bp], 16082643 duplicates)