Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_49W-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_49W-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_49W-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_49W-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70833916 total, 50359 skipped (flags/unmapped)
Fragments: 35520169 total (35223885 tlen-paired, 3022 hash-paired, 281 singletons, 12417 discordant, 280564 orphans, 12032 too large [>5000 bp], 12074366 duplicates)
Reads: 76184145 total, 42737 skipped (flags/unmapped)
Fragments: 38208833 total (37904094 tlen-paired, 1876 hash-paired, 434 singletons, 8601 discordant, 293828 orphans, 9002 too large [>5000 bp], 12729012 duplicates)
Reads: 83894410 total, 81243 skipped (flags/unmapped)
Fragments: 42187885 total (41312092 tlen-paired, 2303 hash-paired, 355 singletons, 169405 discordant, 703730 orphans, 70741 too large [>5000 bp], 14392592 duplicates)
Reads: 83330754 total, 46638 skipped (flags/unmapped)
Fragments: 41791396 total (41429046 tlen-paired, 2995 hash-paired, 297 singletons, 13263 discordant, 345795 orphans, 23708 too large [>5000 bp], 14280590 duplicates)