Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_KU7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_KU7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_KU7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_KU7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88530164 total, 61376 skipped (flags/unmapped)
Fragments: 44394259 total (44033557 tlen-paired, 3373 hash-paired, 336 singletons, 14509 discordant, 342484 orphans, 11545 too large [>5000 bp], 16703204 duplicates)
Reads: 94908260 total, 50479 skipped (flags/unmapped)
Fragments: 47598690 total (47225680 tlen-paired, 2598 hash-paired, 409 singletons, 9809 discordant, 360194 orphans, 10502 too large [>5000 bp], 17561247 duplicates)
Reads: 104925998 total, 90186 skipped (flags/unmapped)
Fragments: 52772855 total (51670595 tlen-paired, 3080 hash-paired, 390 singletons, 214362 discordant, 884428 orphans, 87460 too large [>5000 bp], 19993822 duplicates)
Reads: 104180393 total, 57857 skipped (flags/unmapped)
Fragments: 52252002 total (51805570 tlen-paired, 4846 hash-paired, 338 singletons, 14440 discordant, 426808 orphans, 22839 too large [>5000 bp], 19787780 duplicates)