Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1XP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1XP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1XP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1XP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76614290 total, 57451 skipped (flags/unmapped)
Fragments: 38404349 total (38106728 tlen-paired, 3495 hash-paired, 336 singletons, 16555 discordant, 277235 orphans, 12856 too large [>5000 bp], 13268120 duplicates)
Reads: 81781850 total, 51350 skipped (flags/unmapped)
Fragments: 40998835 total (40664558 tlen-paired, 2780 hash-paired, 321 singletons, 14437 discordant, 316739 orphans, 24945 too large [>5000 bp], 14293907 duplicates)
Reads: 82262164 total, 47282 skipped (flags/unmapped)
Fragments: 41237668 total (40941663 tlen-paired, 2204 hash-paired, 382 singletons, 11925 discordant, 281494 orphans, 10711 too large [>5000 bp], 14009301 duplicates)
Reads: 90021328 total, 84545 skipped (flags/unmapped)
Fragments: 45213371 total (44452509 tlen-paired, 3333 hash-paired, 335 singletons, 146142 discordant, 611052 orphans, 60714 too large [>5000 bp], 15794085 duplicates)