Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5ZB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5ZB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5ZB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5ZB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61161425 total, 38510 skipped (flags/unmapped)
Fragments: 30697816 total (30400992 tlen-paired, 2235 hash-paired, 331 singletons, 6728 discordant, 287530 orphans, 7572 too large [>5000 bp], 10600489 duplicates)
Reads: 56900568 total, 45705 skipped (flags/unmapped)
Fragments: 28550079 total (28272431 tlen-paired, 2591 hash-paired, 280 singletons, 9326 discordant, 265451 orphans, 10218 too large [>5000 bp], 10082612 duplicates)
Reads: 67207964 total, 41213 skipped (flags/unmapped)
Fragments: 33734893 total (33380299 tlen-paired, 5352 hash-paired, 205 singletons, 10051 discordant, 338986 orphans, 18078 too large [>5000 bp], 11956930 duplicates)
Reads: 67992152 total, 70405 skipped (flags/unmapped)
Fragments: 34247976 total (33349049 tlen-paired, 2281 hash-paired, 280 singletons, 177219 discordant, 719147 orphans, 72611 too large [>5000 bp], 12086956 duplicates)