Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0TI-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0TI-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0TI-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0TI-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79725513 total, 65179 skipped (flags/unmapped)
Fragments: 40023327 total (39595161 tlen-paired, 4100 hash-paired, 317 singletons, 12624 discordant, 411125 orphans, 12561 too large [>5000 bp], 15412359 duplicates)
Reads: 85684610 total, 57380 skipped (flags/unmapped)
Fragments: 43029658 total (42524606 tlen-paired, 6365 hash-paired, 315 singletons, 11599 discordant, 486773 orphans, 27501 too large [>5000 bp], 16605875 duplicates)
Reads: 85924011 total, 55190 skipped (flags/unmapped)
Fragments: 43143739 total (42690662 tlen-paired, 2910 hash-paired, 469 singletons, 9298 discordant, 440400 orphans, 11106 too large [>5000 bp], 16224098 duplicates)
Reads: 95571793 total, 99845 skipped (flags/unmapped)
Fragments: 48167527 total (46774206 tlen-paired, 4308 hash-paired, 370 singletons, 283849 discordant, 1104794 orphans, 121029 too large [>5000 bp], 18505932 duplicates)