Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2WD-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2WD-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2WD-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2WD-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62312379 total, 49355 skipped (flags/unmapped)
Fragments: 31219757 total (31011747 tlen-paired, 2560 hash-paired, 275 singletons, 12468 discordant, 192707 orphans, 8246 too large [>5000 bp], 9630797 duplicates)
Reads: 66878446 total, 39198 skipped (flags/unmapped)
Fragments: 33508808 total (33305020 tlen-paired, 2031 hash-paired, 335 singletons, 8705 discordant, 192717 orphans, 7342 too large [>5000 bp], 10183624 duplicates)
Reads: 72695767 total, 46198 skipped (flags/unmapped)
Fragments: 36426295 total (36169513 tlen-paired, 6022 hash-paired, 290 singletons, 13189 discordant, 237281 orphans, 17275 too large [>5000 bp], 11344362 duplicates)
Reads: 72940243 total, 71925 skipped (flags/unmapped)
Fragments: 36600005 total (36093460 tlen-paired, 2120 hash-paired, 322 singletons, 92757 discordant, 411346 orphans, 39988 too large [>5000 bp], 11434333 duplicates)