Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_9VE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_9VE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_9VE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_9VE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70040995 total, 51799 skipped (flags/unmapped)
Fragments: 35107969 total (34846724 tlen-paired, 3128 hash-paired, 250 singletons, 14119 discordant, 243748 orphans, 8628 too large [>5000 bp], 11409113 duplicates)
Reads: 75386392 total, 42604 skipped (flags/unmapped)
Fragments: 37786662 total (37525467 tlen-paired, 2686 hash-paired, 396 singletons, 9557 discordant, 248556 orphans, 9708 too large [>5000 bp], 12075813 duplicates)
Reads: 82552380 total, 50244 skipped (flags/unmapped)
Fragments: 41379560 total (41074375 tlen-paired, 5412 hash-paired, 282 singletons, 14395 discordant, 285096 orphans, 14197 too large [>5000 bp], 13565562 duplicates)
Reads: 82822023 total, 74711 skipped (flags/unmapped)
Fragments: 41602192 total (40905579 tlen-paired, 2635 hash-paired, 298 singletons, 130346 discordant, 563334 orphans, 53280 too large [>5000 bp], 13648597 duplicates)