Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_70Y-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_70Y-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_70Y-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_70Y-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75046502 total, 56532 skipped (flags/unmapped)
Fragments: 37595583 total (37359938 tlen-paired, 3652 hash-paired, 423 singletons, 12187 discordant, 219383 orphans, 9305 too large [>5000 bp], 12373437 duplicates)
Reads: 81133775 total, 47973 skipped (flags/unmapped)
Fragments: 40647527 total (40408628 tlen-paired, 2456 hash-paired, 442 singletons, 8287 discordant, 227714 orphans, 9452 too large [>5000 bp], 13132729 duplicates)
Reads: 88470193 total, 53560 skipped (flags/unmapped)
Fragments: 44325492 total (44023262 tlen-paired, 4089 hash-paired, 310 singletons, 12890 discordant, 284941 orphans, 25450 too large [>5000 bp], 14642492 duplicates)
Reads: 88999457 total, 82306 skipped (flags/unmapped)
Fragments: 44664537 total (44030549 tlen-paired, 2825 hash-paired, 331 singletons, 119300 discordant, 511532 orphans, 49970 too large [>5000 bp], 14815701 duplicates)