Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_IQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_IQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_IQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_IQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 104761457 total, 72285 skipped (flags/unmapped)
Fragments: 52502555 total (52132945 tlen-paired, 4536 hash-paired, 450 singletons, 20084 discordant, 344540 orphans, 14526 too large [>5000 bp], 19305447 duplicates)
Reads: 112223969 total, 60901 skipped (flags/unmapped)
Fragments: 56243542 total (55875431 tlen-paired, 3948 hash-paired, 488 singletons, 13547 discordant, 350128 orphans, 13300 too large [>5000 bp], 20388385 duplicates)
Reads: 123449092 total, 69875 skipped (flags/unmapped)
Fragments: 61873751 total (61429498 tlen-paired, 4768 hash-paired, 466 singletons, 20380 discordant, 418639 orphans, 25410 too large [>5000 bp], 22954308 duplicates)
Reads: 124469046 total, 105964 skipped (flags/unmapped)
Fragments: 62498610 total (61524268 tlen-paired, 4196 hash-paired, 453 singletons, 183428 discordant, 786265 orphans, 76290 too large [>5000 bp], 23226282 duplicates)