Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_50R-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_50R-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_50R-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_50R-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73113012 total, 49115 skipped (flags/unmapped)
Fragments: 36773279 total (36263254 tlen-paired, 2125 hash-paired, 426 singletons, 7501 discordant, 499973 orphans, 8869 too large [>5000 bp], 14424490 duplicates)
Reads: 81144762 total, 55707 skipped (flags/unmapped)
Fragments: 40810368 total (40226421 tlen-paired, 3275 hash-paired, 302 singletons, 10417 discordant, 569953 orphans, 19287 too large [>5000 bp], 16425501 duplicates)
Reads: 69051285 total, 57898 skipped (flags/unmapped)
Fragments: 34719684 total (34240117 tlen-paired, 3148 hash-paired, 398 singletons, 11050 discordant, 464971 orphans, 9694 too large [>5000 bp], 13905196 duplicates)
Reads: 82895895 total, 98157 skipped (flags/unmapped)
Fragments: 41939306 total (40240535 tlen-paired, 2285 hash-paired, 376 singletons, 341322 discordant, 1354788 orphans, 137145 too large [>5000 bp], 16693722 duplicates)