Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7U7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7U7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7U7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7U7-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67414794 total, 53220 skipped (flags/unmapped)
Fragments: 33793499 total (33527947 tlen-paired, 2347 hash-paired, 288 singletons, 17175 discordant, 245742 orphans, 10303 too large [>5000 bp], 11732926 duplicates)
Reads: 72136656 total, 42654 skipped (flags/unmapped)
Fragments: 36162074 total (35899781 tlen-paired, 1896 hash-paired, 312 singletons, 11671 discordant, 248414 orphans, 9290 too large [>5000 bp], 12338008 duplicates)
Reads: 71903241 total, 48943 skipped (flags/unmapped)
Fragments: 36049527 total (35744728 tlen-paired, 5696 hash-paired, 267 singletons, 15405 discordant, 283431 orphans, 19471 too large [>5000 bp], 12631157 duplicates)
Reads: 79351946 total, 78064 skipped (flags/unmapped)
Fragments: 39845670 total (39209097 tlen-paired, 2583 hash-paired, 306 singletons, 120404 discordant, 513280 orphans, 48064 too large [>5000 bp], 13984518 duplicates)