Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_7GE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_7GE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai

The index file is older than the data file: 1136_7GE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7GE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96740377 total, 73654 skipped (flags/unmapped)
Fragments: 48545003 total (48065102 tlen-paired, 4273 hash-paired, 467 singletons, 19759 discordant, 455402 orphans, 16293 too large [>5000 bp], 18375527 duplicates)
Reads: 104338258 total, 60688 skipped (flags/unmapped)
Fragments: 52362477 total (51869594 tlen-paired, 3265 hash-paired, 530 singletons, 13926 discordant, 475162 orphans, 14154 too large [>5000 bp], 19533030 duplicates)
Reads: 115839610 total, 108312 skipped (flags/unmapped)
Fragments: 58330617 total (56885745 tlen-paired, 2673 hash-paired, 422 singletons, 281663 discordant, 1160114 orphans, 115300 too large [>5000 bp], 22162689 duplicates)
Reads: 114576225 total, 66075 skipped (flags/unmapped)
Fragments: 57510800 total (56910109 tlen-paired, 4659 hash-paired, 391 singletons, 20424 discordant, 575217 orphans, 32079 too large [>5000 bp], 21926607 duplicates)