Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_08Y-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_08Y-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_08Y-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai

Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_08Y-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 94962616 total, 66100 skipped (flags/unmapped)
Fragments: 47633752 total (47211636 tlen-paired, 3178 hash-paired, 450 singletons, 18100 discordant, 400388 orphans, 14925 too large [>5000 bp], 18110751 duplicates)
Reads: 102135266 total, 57955 skipped (flags/unmapped)
Fragments: 51234499 total (50799600 tlen-paired, 3168 hash-paired, 561 singletons, 12394 discordant, 418776 orphans, 13825 too large [>5000 bp], 19133663 duplicates)
Reads: 112234759 total, 60469 skipped (flags/unmapped)
Fragments: 56302273 total (55806597 tlen-paired, 4803 hash-paired, 375 singletons, 18265 discordant, 472233 orphans, 21176 too large [>5000 bp], 21545505 duplicates)
Reads: 113275608 total, 106555 skipped (flags/unmapped)
Fragments: 56990297 total (55723730 tlen-paired, 4802 hash-paired, 453 singletons, 246906 discordant, 1014406 orphans, 101659 too large [>5000 bp], 21760692 duplicates)