Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3WR-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3WR-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3WR-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3WR-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71939746 total, 52901 skipped (flags/unmapped)
Fragments: 36067923 total (35781425 tlen-paired, 2494 hash-paired, 297 singletons, 14347 discordant, 269360 orphans, 10328 too large [>5000 bp], 12895871 duplicates)
Reads: 77455256 total, 44752 skipped (flags/unmapped)
Fragments: 38837582 total (38543103 tlen-paired, 2194 hash-paired, 382 singletons, 9461 discordant, 282442 orphans, 9082 too large [>5000 bp], 13620200 duplicates)
Reads: 77081153 total, 48567 skipped (flags/unmapped)
Fragments: 38651429 total (38325164 tlen-paired, 2708 hash-paired, 264 singletons, 12133 discordant, 311160 orphans, 20576 too large [>5000 bp], 13920160 duplicates)
Reads: 85197281 total, 82202 skipped (flags/unmapped)
Fragments: 42810376 total (42014482 tlen-paired, 3068 hash-paired, 349 singletons, 155931 discordant, 636546 orphans, 65611 too large [>5000 bp], 15419611 duplicates)