Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_HS-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_HS-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_HS-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_HS-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96109202 total, 72583 skipped (flags/unmapped)
Fragments: 48153595 total (47833752 tlen-paired, 4692 hash-paired, 463 singletons, 17218 discordant, 297470 orphans, 13681 too large [>5000 bp], 18650522 duplicates)
Reads: 102120990 total, 60916 skipped (flags/unmapped)
Fragments: 51170380 total (50848565 tlen-paired, 4264 hash-paired, 496 singletons, 11823 discordant, 305232 orphans, 12521 too large [>5000 bp], 19535331 duplicates)
Reads: 112350552 total, 67087 skipped (flags/unmapped)
Fragments: 56302325 total (55899158 tlen-paired, 4790 hash-paired, 391 singletons, 17822 discordant, 380164 orphans, 29685 too large [>5000 bp], 21974297 duplicates)
Reads: 112965727 total, 111410 skipped (flags/unmapped)
Fragments: 56703146 total (55857972 tlen-paired, 3796 hash-paired, 423 singletons, 158377 discordant, 682578 orphans, 65513 too large [>5000 bp], 22164948 duplicates)