Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4FP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4FP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4FP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4FP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83594963 total, 52011 skipped (flags/unmapped)
Fragments: 41905519 total (41596504 tlen-paired, 3645 hash-paired, 441 singletons, 13602 discordant, 291327 orphans, 11841 too large [>5000 bp], 14738511 duplicates)
Reads: 78284660 total, 61642 skipped (flags/unmapped)
Fragments: 39243799 total (38926657 tlen-paired, 3331 hash-paired, 398 singletons, 20553 discordant, 292860 orphans, 14339 too large [>5000 bp], 14070578 duplicates)
Reads: 91732385 total, 56457 skipped (flags/unmapped)
Fragments: 45990016 total (45628265 tlen-paired, 5092 hash-paired, 412 singletons, 20869 discordant, 335378 orphans, 15843 too large [>5000 bp], 16600463 duplicates)
Reads: 91902991 total, 86745 skipped (flags/unmapped)
Fragments: 46159573 total (45404542 tlen-paired, 3032 hash-paired, 376 singletons, 137821 discordant, 613802 orphans, 55639 too large [>5000 bp], 16704490 duplicates)