Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6K9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6K9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6K9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6K9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87417320 total, 69599 skipped (flags/unmapped)
Fragments: 43818558 total (43482112 tlen-paired, 4000 hash-paired, 445 singletons, 16741 discordant, 315260 orphans, 13155 too large [>5000 bp], 15918046 duplicates)
Reads: 93210503 total, 55500 skipped (flags/unmapped)
Fragments: 46728552 total (46391171 tlen-paired, 2650 hash-paired, 451 singletons, 11346 discordant, 322934 orphans, 10642 too large [>5000 bp], 16690481 duplicates)
Reads: 103234759 total, 108703 skipped (flags/unmapped)
Fragments: 51861771 total (50940157 tlen-paired, 4146 hash-paired, 401 singletons, 174310 discordant, 742757 orphans, 72836 too large [>5000 bp], 18965324 duplicates)
Reads: 103063484 total, 62904 skipped (flags/unmapped)
Fragments: 51668474 total (51259039 tlen-paired, 3984 hash-paired, 337 singletons, 17853 discordant, 387261 orphans, 25615 too large [>5000 bp], 18902405 duplicates)