Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_4XQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_4XQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_4XQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4XQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71077672 total, 46509 skipped (flags/unmapped)
Fragments: 35636078 total (35361520 tlen-paired, 3346 hash-paired, 348 singletons, 10291 discordant, 260573 orphans, 9964 too large [>5000 bp], 11805475 duplicates)
Reads: 65561284 total, 55878 skipped (flags/unmapped)
Fragments: 32870067 total (32597272 tlen-paired, 3651 hash-paired, 304 singletons, 15342 discordant, 253498 orphans, 9537 too large [>5000 bp], 11117936 duplicates)
Reads: 77079793 total, 53666 skipped (flags/unmapped)
Fragments: 38644697 total (38310165 tlen-paired, 4698 hash-paired, 315 singletons, 15565 discordant, 313954 orphans, 25501 too large [>5000 bp], 13133779 duplicates)
Reads: 77849622 total, 80485 skipped (flags/unmapped)
Fragments: 39116200 total (38407167 tlen-paired, 2961 hash-paired, 324 singletons, 133239 discordant, 572509 orphans, 54785 too large [>5000 bp], 13280014 duplicates)