Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3CK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3CK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3CK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3CK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86256796 total, 61872 skipped (flags/unmapped)
Fragments: 43224773 total (42918346 tlen-paired, 4559 hash-paired, 405 singletons, 19622 discordant, 281841 orphans, 13812 too large [>5000 bp], 14489055 duplicates)
Reads: 92450458 total, 50717 skipped (flags/unmapped)
Fragments: 46330266 total (46029454 tlen-paired, 3185 hash-paired, 405 singletons, 13904 discordant, 283318 orphans, 11466 too large [>5000 bp], 15291904 duplicates)
Reads: 92181870 total, 54356 skipped (flags/unmapped)
Fragments: 46204124 total (45860967 tlen-paired, 5983 hash-paired, 325 singletons, 16496 discordant, 320353 orphans, 19972 too large [>5000 bp], 15643169 duplicates)
Reads: 101407273 total, 85196 skipped (flags/unmapped)
Fragments: 50896358 total (50173947 tlen-paired, 2013 hash-paired, 366 singletons, 135391 discordant, 584641 orphans, 57184 too large [>5000 bp], 17283325 duplicates)