Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_62D-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_62D-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_62D-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_62D-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73648741 total, 54732 skipped (flags/unmapped)
Fragments: 36916297 total (36644215 tlen-paired, 3728 hash-paired, 318 singletons, 13841 discordant, 254195 orphans, 7964 too large [>5000 bp], 12323378 duplicates)
Reads: 78445014 total, 45104 skipped (flags/unmapped)
Fragments: 39322135 total (39047678 tlen-paired, 2624 hash-paired, 411 singletons, 9253 discordant, 262169 orphans, 9110 too large [>5000 bp], 12871164 duplicates)
Reads: 87191184 total, 81567 skipped (flags/unmapped)
Fragments: 43793890 total (43051786 tlen-paired, 2429 hash-paired, 355 singletons, 142154 discordant, 597166 orphans, 59679 too large [>5000 bp], 14684585 duplicates)
Reads: 86661110 total, 49976 skipped (flags/unmapped)
Fragments: 43440734 total (43125122 tlen-paired, 2541 hash-paired, 294 singletons, 13699 discordant, 299078 orphans, 14519 too large [>5000 bp], 14549342 duplicates)