Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_42J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_42J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_42J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_42J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 100190597 total, 70541 skipped (flags/unmapped)
Fragments: 50221934 total (49852562 tlen-paired, 4633 hash-paired, 436 singletons, 18095 discordant, 346208 orphans, 11416 too large [>5000 bp], 18733646 duplicates)
Reads: 107744183 total, 60885 skipped (flags/unmapped)
Fragments: 54009073 total (53631390 tlen-paired, 3705 hash-paired, 546 singletons, 12830 discordant, 360602 orphans, 13150 too large [>5000 bp], 19760705 duplicates)
Reads: 107172993 total, 61520 skipped (flags/unmapped)
Fragments: 53728094 total (53308702 tlen-paired, 5148 hash-paired, 408 singletons, 15877 discordant, 397959 orphans, 26826 too large [>5000 bp], 20194282 duplicates)
Reads: 118447890 total, 100874 skipped (flags/unmapped)
Fragments: 59495076 total (58483672 tlen-paired, 4070 hash-paired, 466 singletons, 196994 discordant, 809874 orphans, 83602 too large [>5000 bp], 22379844 duplicates)