Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7BQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_7BQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_7BQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_7BQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai

Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72935957 total, 57972 skipped (flags/unmapped)
Fragments: 36569152 total (36265954 tlen-paired, 3215 hash-paired, 339 singletons, 13796 discordant, 285848 orphans, 12934 too large [>5000 bp], 13640100 duplicates)
Reads: 79515927 total, 48046 skipped (flags/unmapped)
Fragments: 39878996 total (39557696 tlen-paired, 2805 hash-paired, 399 singletons, 9604 discordant, 308492 orphans, 9390 too large [>5000 bp], 14553552 duplicates)
Reads: 78320019 total, 52752 skipped (flags/unmapped)
Fragments: 39278239 total (38941581 tlen-paired, 3674 hash-paired, 335 singletons, 11553 discordant, 321096 orphans, 16110 too large [>5000 bp], 14784951 duplicates)
Reads: 86072513 total, 88868 skipped (flags/unmapped)
Fragments: 43278113 total (42388754 tlen-paired, 2186 hash-paired, 358 singletons, 174316 discordant, 712499 orphans, 70138 too large [>5000 bp], 16309213 duplicates)