Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BSGQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BSGQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BSGQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BSGQ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77895003 total, 70203 skipped (flags/unmapped)
Fragments: 39101162 total (38669272 tlen-paired, 4457 hash-paired, 429 singletons, 20383 discordant, 406621 orphans, 14763 too large [>5000 bp], 15061582 duplicates)
Reads: 83243549 total, 56792 skipped (flags/unmapped)
Fragments: 41791860 total (41355851 tlen-paired, 3081 hash-paired, 398 singletons, 14527 discordant, 418003 orphans, 10719 too large [>5000 bp], 15804739 duplicates)
Reads: 91522578 total, 62766 skipped (flags/unmapped)
Fragments: 45949107 total (45448069 tlen-paired, 4975 hash-paired, 398 singletons, 21499 discordant, 474166 orphans, 18081 too large [>5000 bp], 17844196 duplicates)
Reads: 92497245 total, 100949 skipped (flags/unmapped)
Fragments: 46596108 total (45372108 tlen-paired, 3781 hash-paired, 399 singletons, 234677 discordant, 985143 orphans, 94811 too large [>5000 bp], 18030331 duplicates)