Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5JJ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5JJ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5JJ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5JJ-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69117279 total, 50568 skipped (flags/unmapped)
Fragments: 34643612 total (34389002 tlen-paired, 3051 hash-paired, 280 singletons, 15806 discordant, 235473 orphans, 7620 too large [>5000 bp], 11306439 duplicates)
Reads: 74771805 total, 43631 skipped (flags/unmapped)
Fragments: 37473363 total (37222445 tlen-paired, 2428 hash-paired, 309 singletons, 11176 discordant, 237005 orphans, 9381 too large [>5000 bp], 12040622 duplicates)
Reads: 74203229 total, 45789 skipped (flags/unmapped)
Fragments: 37193659 total (36915341 tlen-paired, 3994 hash-paired, 232 singletons, 13024 discordant, 261068 orphans, 15711 too large [>5000 bp], 12275597 duplicates)
Reads: 81627373 total, 72101 skipped (flags/unmapped)
Fragments: 40975858 total (40366779 tlen-paired, 2055 hash-paired, 267 singletons, 114882 discordant, 491875 orphans, 47849 too large [>5000 bp], 13554762 duplicates)