Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3ZY-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3ZY-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3ZY-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3ZY-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93983812 total, 67247 skipped (flags/unmapped)
Fragments: 47121444 total (46744323 tlen-paired, 4250 hash-paired, 378 singletons, 16146 discordant, 356347 orphans, 15201 too large [>5000 bp], 17340910 duplicates)
Reads: 101621157 total, 56516 skipped (flags/unmapped)
Fragments: 50957604 total (50567778 tlen-paired, 3631 hash-paired, 474 singletons, 11028 discordant, 374693 orphans, 12300 too large [>5000 bp], 18433062 duplicates)
Reads: 110821001 total, 62626 skipped (flags/unmapped)
Fragments: 55573015 total (55105001 tlen-paired, 5920 hash-paired, 403 singletons, 16885 discordant, 444806 orphans, 28777 too large [>5000 bp], 20592168 duplicates)
Reads: 111655514 total, 108791 skipped (flags/unmapped)
Fragments: 56133370 total (55019409 tlen-paired, 3608 hash-paired, 418 singletons, 215146 discordant, 894789 orphans, 87595 too large [>5000 bp], 20789792 duplicates)