Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6QB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6QB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6QB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6QB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73954605 total, 55848 skipped (flags/unmapped)
Fragments: 37057759 total (36805587 tlen-paired, 2996 hash-paired, 406 singletons, 12709 discordant, 236061 orphans, 9853 too large [>5000 bp], 12041744 duplicates)
Reads: 79089892 total, 48683 skipped (flags/unmapped)
Fragments: 39631758 total (39376160 tlen-paired, 3844 hash-paired, 402 singletons, 8935 discordant, 242417 orphans, 10256 too large [>5000 bp], 12712280 duplicates)
Reads: 87282913 total, 78392 skipped (flags/unmapped)
Fragments: 43824730 total (43142380 tlen-paired, 1900 hash-paired, 412 singletons, 128905 discordant, 551133 orphans, 53303 too large [>5000 bp], 14449979 duplicates)
Reads: 87137375 total, 52999 skipped (flags/unmapped)
Fragments: 43664814 total (43353560 tlen-paired, 3790 hash-paired, 301 singletons, 13812 discordant, 293351 orphans, 24200 too large [>5000 bp], 14367135 duplicates)