Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_8CP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8CP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8CP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8CP-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 100195042 total, 72105 skipped (flags/unmapped)
Fragments: 50243586 total (49830025 tlen-paired, 3760 hash-paired, 443 singletons, 19970 discordant, 389388 orphans, 12798 too large [>5000 bp], 18713262 duplicates)
Reads: 109765446 total, 63272 skipped (flags/unmapped)
Fragments: 55042092 total (54613450 tlen-paired, 4143 hash-paired, 516 singletons, 14431 discordant, 409552 orphans, 14029 too large [>5000 bp], 20116170 duplicates)
Reads: 108773543 total, 66029 skipped (flags/unmapped)
Fragments: 54548349 total (54100019 tlen-paired, 6087 hash-paired, 386 singletons, 17047 discordant, 424810 orphans, 18006 too large [>5000 bp], 20508183 duplicates)
Reads: 119884376 total, 110125 skipped (flags/unmapped)
Fragments: 60256177 total (59102172 tlen-paired, 3410 hash-paired, 423 singletons, 227346 discordant, 922826 orphans, 92573 too large [>5000 bp], 22597099 duplicates)