Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2WO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2WO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2WO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2WO-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74725057 total, 54181 skipped (flags/unmapped)
Fragments: 37454410 total (37179115 tlen-paired, 3533 hash-paired, 373 singletons, 14008 discordant, 257381 orphans, 9905 too large [>5000 bp], 12856026 duplicates)
Reads: 81145929 total, 44772 skipped (flags/unmapped)
Fragments: 40675216 total (40393576 tlen-paired, 2430 hash-paired, 399 singletons, 10775 discordant, 268036 orphans, 9580 too large [>5000 bp], 13628359 duplicates)
Reads: 80275237 total, 48688 skipped (flags/unmapped)
Fragments: 40242539 total (39940620 tlen-paired, 4427 hash-paired, 290 singletons, 12501 discordant, 284701 orphans, 13231 too large [>5000 bp], 13876352 duplicates)
Reads: 88259738 total, 83928 skipped (flags/unmapped)
Fragments: 44321744 total (43590172 tlen-paired, 2744 hash-paired, 347 singletons, 141160 discordant, 587321 orphans, 59995 too large [>5000 bp], 15294763 duplicates)