Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_5BU-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_5BU-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_5BU-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai


[W::hts_idx_load3] The index file is older than the data file: 1136_5BU-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65414892 total, 41174 skipped (flags/unmapped)
Fragments: 32813364 total (32531713 tlen-paired, 2840 hash-paired, 358 singletons, 8039 discordant, 270414 orphans, 8881 too large [>5000 bp], 11334694 duplicates)
Reads: 72482223 total, 43297 skipped (flags/unmapped)
Fragments: 36357972 total (36038767 tlen-paired, 1971 hash-paired, 242 singletons, 11914 discordant, 305078 orphans, 14151 too large [>5000 bp], 12914384 duplicates)
Reads: 61473970 total, 49028 skipped (flags/unmapped)
Fragments: 30834334 total (30560949 tlen-paired, 2397 hash-paired, 256 singletons, 11984 discordant, 258748 orphans, 7639 too large [>5000 bp], 10833288 duplicates)
Reads: 72867677 total, 73618 skipped (flags/unmapped)
Fragments: 36658376 total (35851097 tlen-paired, 2555 hash-paired, 322 singletons, 156061 discordant, 648341 orphans, 62985 too large [>5000 bp], 13009857 duplicates)