Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5I6-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5I6-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5I6-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5I6-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64976678 total, 50660 skipped (flags/unmapped)
Fragments: 32581869 total (32307740 tlen-paired, 3113 hash-paired, 252 singletons, 13840 discordant, 256924 orphans, 9728 too large [>5000 bp], 10597455 duplicates)
Reads: 69971613 total, 42449 skipped (flags/unmapped)
Fragments: 35088289 total (34809467 tlen-paired, 2527 hash-paired, 311 singletons, 9603 discordant, 266381 orphans, 9639 too large [>5000 bp], 11212732 duplicates)
Reads: 76807856 total, 74572 skipped (flags/unmapped)
Fragments: 38613292 total (37857978 tlen-paired, 2807 hash-paired, 296 singletons, 143645 discordant, 608566 orphans, 57781 too large [>5000 bp], 12641542 duplicates)
Reads: 76571207 total, 45233 skipped (flags/unmapped)
Fragments: 38398192 total (38071971 tlen-paired, 2657 hash-paired, 282 singletons, 14246 discordant, 309036 orphans, 19454 too large [>5000 bp], 12570126 duplicates)